Fearful

Yet again Coco finds himself in agreement with a sociologist. Robert Dingwall has written about the inappropriate use of fear to coerce specific behaviours at the beginning and during the passage of the covid-19 crisis. Coco must admit to being one of those complacent ones who did not ‘feel sufficiently personally threatened’ due to a personal examination of ‘the low death rate in [the] demographic group’ to which Coco belonged. Coco must confess however that Coco has been taken to task several times by more than one individual of more than merely competent medical standing for holding such a position.

Coco had long thought that the language used to convey the message promulgated by governments and their advisors promoted fear, and that therefore a different language should have been used, given that it always seemed to magnify the risks and dangers of the virus. Coco was not ready to conclude that the language had been deliberately chosen by governments and their advisors to promote such fear.

Richard D concludes very clearly in the opposite way and Coco is quite inclined to agree with him.

Elephantiasis et al

At the Makerere University Environmental Health Students’ Association 19th Scientific Conference in April 2024 Dr Arthur Bagonza presented qualitative results from a study funded by the ILF into the burden and prevalence of lymphatic filariasis in Uganda.

A dangerous work(around)

You may have heard the expression: Rubbish in, rubbish out.

Forty years ago Coco used a early version of SuperCalc (SC2 – a spreadsheet like Excel for those who cannot remember) for the preparation of monthly reports under the operating system C/PM. It was ‘cutting’ edge at the time using simple lists of transactions which were converted into a report showing monthly, cumulative and projected figures against a flexible budget. Coco shall not go into the technical details of this. It was not many months before Coco noticed that the report sometimes did not balance.

How could that be? The original data was complete, and balanced. Careful examination of the code indicated that nothing had been left out. It was only when Coco had set the code to run step by step, updating the display at each step, that quite by accident the problem revealed itself. As you will know, and if you do not, ledger accounts have two sides, a debit (on the left) and a credit (on the right). The code identified separately each debit total and each credit total for every account. This is important for the grand total of the debits and the credits must agree. In order to obtain the balance on the account for the report, the difference between the debits and the credits on each account must be determined. That was a very simple action. Put the debits into column A, the credits into column B, calculate the balance in and pick it up from column C.

This is where the mistake occurred. As SuperCalc accepted the values in column B it erased the value in every 16th row, and only every sixteenth row, in column A.

It is said that, for a given set of inputs a computer will always give the same result. You may give it that set of inputs any number of times, nothing will ever be different. If something is different, then it you must look at the programme not the inputs.

Coco never found out what it was in the SuperCalc code that prompted it to do this, but it was consistent. The correct solution was to fix SuperCalc, but my solution was not to try to fix SuperCalc but to fix the data to work around the error. Coco added dummy accounts into the system, each of which would have no data assigned to them and would fall onto these 16th rows. After that the reports balanced. It was a concern however that there might be something else lying around which would creep up unawares. We found such things were lurking later, when the then victorious Excel now and again got an arithmetic calculation wrong. The problem is still with us today if we expect say +(1-0.1-0.1-0.1-0.1-0.1-0.1-0.1-0.1-0.1-0.1) to be 0, it is not quite zero.

So we consider the mRNA vaccine, where it is reported (Covid study: mRNA vaccines could be fine-tuned) that there is a one in three probability that the ribosome will incorrectly read the data held in the mRNA. The solution is, so they say, to use non-slip mRNA, which will eradicate the incorrect reading of the data. They speak of the data as code, and code it is, just as this note is itself written in an alphabetic code which we read with our eyes and interpret with our brains.

The data, the code, however is read (just as Coco’s data was read by the SuperCalc code) by a ribosome, which is itself a complex chemical machine with its own code that interacts with the data in the mRNA. If one in three times the reading of the data produces a different result it suggests that it is something in the ribosomes that are reading the data that is different. Changing the data may, as it did for Coco, skip the thing that we do not understand that actually makes the difference, but the thing we do not understand is still there waiting to catch us out in different circumstances.

There is another possibility. Coco mentioned above that a given set of inputs will always yield the same output. We have seen many situations in the electronic world where this did not seem to be the case. Careful examination showed however that the starting conditions, which we thought were identical were not. A prior process, which may or may not have taken place, influenced the results of the later inputs. There was, if you like, an unknown input over which we had no control, which changed the result. This was unlike Coco’s SuperCalc problem.

Should we not try to understand why the same set of data, the same code, produces different outcomes one in three times before we say we have fixed it? Coco did not fix his problem, Coco merely worked around it, not knowing what other problems may arise later. What is it that causes the ribosome to read the data ‘incorrectly’ one in three times? Or is it that it is the two in three times that it does what we want it to do that is the incorrect result?

The unintended result of the misreading, or possibly correct reading, of the mRNA is the production of a few unintended proteins. Coco thinks that the implication is ‘harmless’ proteins, but that is not actually said. So the workaround is to change the mRNA, the data, in such a way that the ribosome will always read the data as we want it to: but do we understand why it read the original data in two different ways, not just occasionally but quite regularly? What else was going on? What was the unknown input that caused the data to be read in either of the two different ways? We have not addressed that, have we?

To address the matter with a workaround in the data is both reckless and negligent. When Coco used a workaround, he was only dealing with the reporting of how money gathered and how it had been used, the reporting is important, yes, but mRNA affects people’s lives.

International Lymphoedema Framework – Uganda Framework

There is excitement in the world as the ILF begins an epidemiological (for those of you who do not understand that word, let Coco stand alongside you) study to ascertain the prevalence of lymphoedema in Uganda.

It is well known that lymphatic filariasis is endemic in tropical countries, alongside other mosquito borne diseases, but the real extent of the problem and its expression among the people is not properly understood.

Lymphatic filariasis is only one of the causes of lymphoedema in East Africa, all of the other causes, whether primary or secondary are also present, though the mix will be different than in Europe, and other parts of the world.

The International Lymphoedema Framework, through its chairman, has provided funding for the study which will be lead by Dr Arthur Bagonza of Makerere University in two districts in the village regions of Uganda.

Basic training in the identification of three stages of progression of the disease has been completed in Kampala this week and the lead field workers are ready to take the tool out into the field to complete their survey. Dr S Narahari of the IAD, India, and Professor Christine Moffatt will act as referees to confirm or vary the stage assessments made by the field workers.

The survey will assess the numbers and proportion of individuals in the community affected together with the impact of the disease upon the quality of life of the sufferers. The results will be used to inform the Ministry of Health, who have given their unqualified support to the study, in the allocation of resources to combat the problem and relieve the suffering.

Dr Arthur with Dr Alfred Mubangizi, Assistant Commissioner Health Services – Vector Borne and Neglected Tropical Diseases, Ministry of Health with the rest of the team who attended the inaugural meeting.

The Ugandan framework, lead by Dr Arthur Boganza and Lydia Kabili, is a newly formed framework within the International Lymphoedema Framework and benefits from a longstanding relationship with Prof. Linda Gibson and Makerere University.

Debate and dogma

Debate is valuable. Debate and disagreement are necessary in science. Debate is dangerous.

Three statements and it may surprise you, or else it may not, that these statements are not incontrovertible; indeed, they provoke as much controversy as these:

Dogmatism is valuable. Dogmatism is necessary. Dogmatism is dangerous.

Why should this, that debate is dangerous, be?

Often it may arise because reputations or careers are at stake. If the foundation of your life is that science which says A is true and another comes along and asks the question: How do you know A is true? Have you considered this set of data? Does it not suggest that A may not be true in all circumstances? then from your perspective the very asking of the question is a personal challenge not a scientific one.

So in a very simple case, you may notice that if you pump 1 kilocalorie of energy into 1 kilogram of water its temperature rises by 1°C (A is true). If therefore you conclude that when you pump 110 kilocalories in its temperature will rise by 110°C, you may be disappointed unless you also increased the pressure under which you heated the water to at least one and half atmospheres. Change of state effects would disrupt the thermal elevation – you may even lose enough water in trying to do so for the espresso that you would have had in order to recover from the falsification of your paradigm had you not the change of state occurred. A is not always true, or if it is true it is true only in specific well-defined circumstances, and so your understanding must be improved. You may want to hold onto your idea that A is true, but the data is against you, or is it? Look again. You may think that you must now say A is not true, but the actual position may be that A is not true only under certain, perhaps clearly defined but perhaps not, conditions.

We should note here, though it is not our main point that it is folly to base our paradigm of life upon our own transient scientific understanding of the way the world works. We are here speaking of derived paradigms, not underlying paradigms which we shall address shortly.

Scientific methods and historical analysis

Now our understanding of the relationships between heat, temperature, pressure and water is quite well understood. We are dealing with a simple (but it is a three body problem) molecule with well (is that really so?) understood properties. Experiments may be easily defined and conducted in well controlled ways, and repeated indefinitely by unrelated individuals who will, within the limits of observable experimental measurement, always obtain the same results, but our understandings elsewhere are not quite so clear. Experiments may not be possible or, if they are, controls may be difficult to impose. We may not know or even understand all of the factors which may influence the outcome. When Rutherford fired his artillery at a sheet of little more than tissue paper he expected nothing other than to punch holes in it. The data obtained however required a rethink. Some of the artillery shells, alpha particles, bounced back off the thin film of gold leaf.  Whilst Rutherford was able to describe what was happening, a proper theoretical understanding of what was taking place would not be available until several years later.

We not only require then data, which Rutherford had, but we need a robust framework within which that data may be interpreted. The old ideas of phlogiston and æther were abandoned when it was found that they could no longer explain the data that became available. Now however in the presence of the hypotheses concerning the warping of space one may wonder: how can something which is the lack of existence of anything, ie emptiness, be warped. Does not this suggest the presence of a substance, an æther, which is presently yet undetected, in that emptiness which is the thing that is being warped? That however is not a discussion for this article.

When we being to look at things rather more complex than water, though they are structures in which water is a major component, and indeed the symptom if not the cause of the problem, such as a biological machine, driven itself by smaller complex biological components, with its own messaging, delivery and disposal systems some of whose functions overlap and which are mutually dependent upon each other as well as upon the other components of the machine whose efficient function is also required for the maintenance of the systems of communication, we may have to acknowledge that our understanding of the behaviours of this system is somewhat less than our understanding of the behaviour of water. We are also faced with the fact that we cannot design experiments to perform on these machines, for that would be unethical, which would allow only one part to function whilst holding the others in stasis. We are therefore left with only the possibility of RCT (randomised controll(ed) trials) and clinical observation. These may result in significant quantities of data, from which tentative conclusions may be drawn until we have a robust theoretical framework from which explanations may be drawn and predictions may be made.

In some circumstances we have to resort to forensic analysis of the data which has many useful, indeed valuable, techniques associated with it, where there is no possibility of repetition of a single one time event, in order to understand it. Now I need say no more here than that forensic examination is simply another word for guess work in which the actual solution after all the possible explanations have been considered and shown to be wanting is the ‘impossible’ explanation. Darwin left this teasingly in his hypothesis concerning origins laying down clearly the grounds on which his hypothesis must be tested and leaving later generations to show the wantonness of his hypothesis.  Mendel began this work and it has continued in many guises to the present day with perhaps greater and greater skill being shown than of which Darwin ever dreamed in the elaboration of the hypothesis in the vain hope that somehow it may be possible to avoid the consequences of a failure at the quite simple test that he proposed. The resultant edifice is not even built on sand, it is built upon the impossibility of two mutually exclusive requirements existing at the same time, not to mention the uncountable (though not in the mathematical sense of the word) number of violations of the principle that change must only take place in simple single steps.

The possibility then must be left open that whatever conclusions we draw may be falsified by another set of data drawn from a different RCT or set of observations in other circumstances.

Contemporary events

In recent days we have heard many say that you must follow the science, but the science has been inconclusive and contradictory. At times the message drawn from this has been inappropriate and non sequitur. For example to say that acquiring immunity from a particular disease will protect others is patently untrue . If I have immunity from say TB then I am more likely to carry the disease unknowingly and therefore become a greater danger to those whom I meet who have no immunity. We only need to think of the case of Mary Mallon to understand this. I am being more socially responsible by not acquiring immunity, for then I would know when I were ill and could take appropriate steps to protect others. There are many other things that could be said both about the messages drawn in respect of the recent global infection and the quality of the data on which they are based, again however this article is not the place for that discussion.

Underlying paradigm

A second reason perhaps for debate being seen as dangerous is that it not only challenges the conclusions drawn from the data but undermines the paradigm which lies behind the specific interpretations of the data. The paradigm is held dearly by those who hold it, for they have an abhorrence, which some are not afraid to display, towards alternative paradigms within which alternative understandings of the data may be held, and which each can yield contrastingly different conclusions than the opinions generally held.

The hostility to any alternative view, even if it can be supported by rigorous mathematical calculations using the same data and mathematics that the majority view use, leads to a stifling of debate and ultimately to a stagnation of science. The silencing of those whom you see as your opponents in science is detrimental to progress.

It is exceedingly important in science that you recognise those who disagree with you as being honest scientists. None of us are infallible, and none of us have a perfect understanding. Archimedes was wrong. Pythagoras was wrong. Galileo and Copernicus were wrong. Einstein and Bohr were wrong. Only two of us were right, and I cannot remember who the other one is.  Of course I jest, but you, dear reader, know what I mean.

It is not, at least from a scientific perspective, wrong to hold different underlying paradigms for to hold a paradigm is necessary in order to offer interpretations of data, but we cross the line when we say that our interpretation is the only valid one.

The correct position – to encourage debate

Every true scientist lays down a challenge for every other scientist: This is my hypothesis A is true, disprove it if you will, please. His delight is, and if not is, it should be, that you take up that challenge. If every other scientist does not rise to the challenge then no progress will be made and we shall do nothing more than promulgate the same false ideas with which Galileo agonised. It is not until we have demonstrated that A cannot be false that we have any real certainty that A might be true. The scientist must live dangerously, expecting that every one else will wish to prove him wrong and in failing to do so demonstrate that he might be right.

Conclusion

Debate is valuable for it is the life blood of progress. Debate and disagreement are necessary in science for we do not have a complete and perfect understanding. Debate is dangerous for it challenges our well beloved but imperfect understandings of how things are and may require us to change.

The corollary ‘Dogmatism is valuable. Dogmatism is necessary. Dogmatism is dangerous.’  has also been demonstrated in this short article. It is left as an exercise to the reader to deconstruct and reconstruct the article appropriately.

International Lymphoedema Framework

I have just returned from the International Lymphoedema Conference 2023  #ILF which was held in Nottingham. It was a wonderful scientific, medical and therapeutic conference for any who would have any interest at all in lymphoedema in its many and varied forms. Much of the science went over my head, especially when presented by the Dutch, but it was still possible to detect some conflicting hypotheses and the robust debate among and between the participants. Such debate demonstrates a very healthy environment for the development of sound science based upon real-world evidence. Among the participants were the #theila the International Lipoedema Association whose stall was well worth the visit. What has lipoedema to do with lymphoedema? You may well ask, but I shall offer no explanation here for fear of misleading you, save to say that those who know know. Do visit their websites:
International Lymphoedema Framework
International Lipoedema Association

ILA Stall

More pictures from the conference – password required – here

More may be read about the involvement of ILA in the conference here. Note especially the engaging discussions: Thought-provoking discussions led to a deeper awareness of the challenges faced by the lipoedema community. It is a well thought out understatement indeed.

How to distract your auditor’s comprehension

When the message is weak, what do you do?

The answer of the preacher is often: Shout! but there is a better way

The ubiquitous presence of punctuated, percussive sound waves emanating from the large black boxes carefully positioned around the auditorium at 64hz or thereabouts in the modern age, but not only so but also in many ancient cultures, is an essential element of the many shared experiences of groups of individuals in our divers communities. It dulls the senses and raises the ire so that any criticism which may attend the auditor is directed solely at the manner of the presentation and not at the content thereof.

How different is the approach of those who wish to provide not only entertainment in a shared experience which is felt in the body, but also an enlightenment of the mind where such manipulation of that which so easily distracts us from what is important, that is the content of the presentation.

There are many who would dull our minds in order to persuade us to accept the message presented to us. So, scam telephone calls, email and text messages represent some of the worst excesses of this, and what will they be like when AI starts to generate them? How long do we have to wait before the scammers voice sound just like that of your friend who is being impersonated? Hot on the heels of such as these are those who would sell you their quack solutions to health, housing, communication and transport problems. It will only cost £xx/month but you do not hear increasing at 4% + inflation each year for the next ten years during which you are locked in, having to pay the full amount if you wish to get out early.

Then we have religious quacks: Do this and live!. It may be true, but you still have to answer for what you have done and in any event you are actually unable to do this Moses said: Their foot shall slip in due time. Be aware of the siren voices that would silence the only message that matters. There is only one name given among men by which we must be saved.

Coupled with the distractive sonic vibrations an attempt was made to provide a cathedral like oracular experience by means of beams of light in the otherwise darkened room, as if streaming through stained glass windows on a bright summer’s day. What a contrast all of this is with the buildings of the Reformers who thought that the lecture theatre was much more commodious to the reception and understanding of the message. In the light of such a place we are able to read the text for ourselves, to review it and take notes of what has been said. Such a context for the delivery of the message is much more fitting and provides a much greater probability that the message will be received and understood for the benefit of both the orator, the auditor and the clients of the auditors.

All of this was designed to create the right ambience for what was then to be presented to us from the dais. We were treated to an inspirational [an adjective that the marketing world would ascribe but not Coco] talk about how to live with stress and other issues in the world. Paul takes this up when writing to Timothy, where he says: For bodily exercise profits a little, (1Tim 4:8) but then points him to what really matters: godliness is profitable for all things, having promise of the life that now is and of that which is to come. (1Tim 4:8) It was interesting, perhaps entertaining, but for all the efforts to provide techniques, promote a proper understanding of self worth, Coco considers missed the mark ignoring what really matters as set out by the apostle.

Godliness with contentment is great gain.

Total energy consumption

One cannot but be impressed with the work of Greene and his students, not just at winning the Queen Elizabeth Prize for Engineering, but for the 40% improvement in the efficiency of solar cells that resulted from the application of their work. The report may be read here: https://www.bbc.co.uk/news/science-environment-64553915 (Queen Elizabeth Prize: Solar team wins prestigious engineering award)

We are also provided with an impressive graph which appears to show that in 2021 solar production of electricity was nearly 50% of that provided by coal. Closer inspection reveals that not all is well with this graph. The percentages do not add up to 100. Something is missing, and most of the missingness can be filled by oil and nuclear, nearly 14% in 2010 falling to 10% in 2021. I am aware that the graph runs to 2022, but I have to restrict my comments to 2021 not having additional data for 2022.

It looks good, but is it?

The second problem we have is that it does not take into account the increase in consumption of electricity since 2010. In 2010 total production was roughly 21TWh, increasing by 25% to 28TWh in 2021. The graph shows nice falling lines for coal and natural gas, which are of course big carbon dioxide producers, as if we are reducing our dependence upon them. If we apply the 25% increase in consumption to the graph however all of the lines tend upwards.

The real problem however is that we appear to be looking solely at electricity consumption. This rather distorts the issues, giving a false impression of how well we are doing in our progress towards the combat of the factors that influence unwanted climate change. A different analysis can be seen if we look not only at electricity consumption, but at the energy costs of electricity production. Coal then comes in at 36%, solar at only 4%. For coal you get out in electricity about one third of what you put in. When you factor in other uses of power, such as transport (shipping, petrol and diesel vehicles, etc) then the picture yet quite different as you may see in the graph below.

Quite a different picture when total energy costs are factored in

Given that the figures behind this have been compiled by BP if there is any bias in them at all it is likely to be in favour of fossil fuels, rather than the other way round, but I have assumed there is no bias. Solar costs are about 3TWh for 2021. Coal is about 44TWh. There is quite a good discussion on https://ourworldindata.org/electricity-mix explaining why we need to look at the production costs of the power we use not just at the power we consume.

The good news is that renewables, which consisted of only 14% of total energy use in 2010 in 2021 consisted of 17%, and increase of 45%.  This mitigated the increase in fossil fuel use, but we still managed to increase out consumption of fossil fuels by 12%.

Let me add in closing that the BBC graph is accurate. It describes precisely what it claims to describe. It could make a nice marketing tool for an electricity supply company that wanted its customers to feel good about buying from them, but it does not provide the information we need to assess where we are in our efforts to decarbonise energy production.

Summary figures:TWhTWh
World20102021
Fossil fuels121480136018112%
Other sources1901927691146%
Total140500163709117%
Fossil fuels86%83%
Other sources14%17%
Detailed figures may be obtained from the data set available at https://ourworldindata.org/electricity-mix

Transplants

An abuse of a great need for a political point

When editors see an opportunity…

Whilst I do not wish to down-play the agony of those who wait for an organ transplant and the grief of those whose loved ones do not receive one in time, it is a little ingenious to use organ transplant resources in the anti-cognitive-racism game that is presently being played out in the UK and probably elsewhere with perhaps more ferocity. I also understand that headlines must be catchy if they are to draw the attention of the prospective reader, so when I saw the headline ‘Black patients wait up to six months longer for organs’ (BBC News) (or more fully on the article itself ‘Organ transplants: Black people wait up to six months longer, NHS figures show’ my interest was aroused.

I hope those who saw the headline read it, as though the headline hints at racism thereby suggesting endemic racism is present, the facts mentioned in the article belie that accusation. White skinned people wait on average 488 days, whilst black skinned people wait 735 days. That does suggest an imbalance of some kind, but the cause of that imbalance is not the colour of the skin but the relative sizes of the pools of organs available. If we ignore any overlap in the pools of organs from black skinned and white-skinned people, the pool for black skinned is proportionately half the size of that available for white skinned people (the article is however slightly thin on the ground for this assertion, but let it be for now), therefore, on the basis of a non-rigorous calculation I would expect to see waiting days for white-skinned people to be only 50% that of black (mathematicians, please correct me), but the actual waiting time is around 66% suggesting that proportionately speaking black-skinned people have shorter waiting times taking into account the pool of resources available.

Curiously, which is why I suggest that there is covert racism behind the article, there is also a reference in the article to the waiting times of Asian people being 650 days, but no further information is given. Given that Asian people wait up to three months longer (longer than what we might ask) why do they not come up for greater attention in the article?

The article does go on to speak of better things, the benefits of transplants, some of the results, and the schemes available and is to be commended for that, but we do not need to use a race card to advertise such things.

Do we?

When darkness falls upon the mind